gi|4826964|ref|NP_005044.1| UV excision repair protein RAD23 hom... 112 2e-24 gi|31541878|ref|NP_080596.2| RIKEN cDNA 2310040G17 [Mus musculus... 111 4e-24 gi|26332489|dbj|BAC29962.1| unnamed protein product [Mus musculus] 111 4e-24 gi|6679605|ref|NP_033036.1| RAD23a homolog [Mus musculus] >gi|17... 110 8e-24 gi|6679607|ref|NP_033037.1| RAD23b homolog [Mus musculus] >gi|17... 102 2e-21 gi|18089249|gb|AAH20973.1|AAH20973 RAD23 homolog B (S. cerevisia... 101 5e-21 gi|4506387|ref|NP_002865.1| UV excision repair protein RAD23 hom... 101 5e-21 gi|28277263|gb|AAH44089.1| Similar to RAD23 homolog B (S. cerevi... 98 5e-20 gi|25527311|pir||JC7783 RAD 23B protein - channel catfish 94 6e-19 gi|30147322|ref|XP_067249.5| similar to UV excision repair prote... 84 6e-16 gi|26351345|dbj|BAC39309.1| unnamed protein product [Mus musculus] 66 2e-10 gi|31204639|ref|XP_311268.1| ENSANGP00000017457 [Anopheles gambi... 60 1e-08 gi|7446460|pir||T14337 RAD23 protein, isoform II - carrot >gi|19... 58 5e-08 gi|4928709|gb|AAD33695.1|AF136606_1 DHR23 [Drosophila melanogaster] 57 1e-07 gi|24638591|ref|NP_651918.2| CG1836-PA [Drosophila melanogaster]... 57 1e-07 gi|25387250|pir||F96827 protein F20B17.8 [imported] - Arabidopsi... 57 1e-07 gi|22330746|ref|NP_565216.2| DNA repair protein RAD23 -related [... 57 1e-07 gi|30409720|dbj|BAC76390.1| RAD23-like protein [Arabidopsis thal... 57 1e-07 gi|30409718|dbj|BAC76389.1| RAD23-like protein [Arabidopsis thal... 57 1e-07 gi|30699439|ref|NP_850982.1| DNA repair protein RAD23 -related [... 57 1e-07 gi|15232924|ref|NP_186903.1| RAD23 -related [Arabidopsis thalian... 57 1e-07 gi|5640111|emb|CAB51544.1| RAD23 protein [Lycopersicon esculentum] 55 3e-07 gi|28920452|gb|EAA29819.1| hypothetical protein [Neurospora crassa] 54 7e-07 gi|15221013|ref|NP_173070.1| DNA repair protein RAD23, putative ... 54 7e-07 gi|25518044|pir||G86296 T24D18.27 protein - Arabidopsis thaliana... 54 7e-07 gi|7446459|pir||T14336 RAD23 protein, isoform I - carrot >gi|191... 54 9e-07 gi|30409722|dbj|BAC76391.1| RAD23-like protein [Arabidopsis thal... 49 2e-05 gi|17537797|ref|NP_496488.1| Ubiquitin family UBA TS-N domain [C... 49 3e-05 gi|19113023|ref|NP_596231.1| nucleotide excision repair protein ... 48 5e-05 gi|30409730|dbj|BAC76395.1| RAD23-like protein [Arabidopsis thal... 48 6e-05 gi|15240922|ref|NP_198663.1| DNA repair protein RAD23, putative ... 48 6e-05 gi|14335004|gb|AAK59766.1| unknown protein [Arabidopsis thaliana] 48 6e-05 gi|7446462|pir||T04150 RAD23 protein homolog - rice >gi|1488297|... 46 2e-04 gi|21355163|ref|NP_651212.1| CG10694-PA [Drosophila melanogaster... 45 3e-04 gi|10177007|dbj|BAB10195.1| gene_id:K5J14.2~pir||T30561~similar ... 45 5e-04 gi|30694012|ref|NP_199037.2| ubiquitin family [Arabidopsis thali... 45 5e-04 gi|30409726|dbj|BAC76393.1| RAD23-like protein [Arabidopsis thal... 44 0.001 gi|7862066|gb|AAF70460.1|AF240445_1 polyubiquitin [Populus tremu... 43 0.002 gi|6323932|ref|NP_014003.1| Required with RAD23 for duplication ... 43 0.002 gi|1352321|sp|P48510|DSK2_YEAST Ubiquitin-like protein DSK2 >gi|... 43 0.002 gi|30692436|ref|NP_564379.2| ubiquitin family [Arabidopsis thali... 42 0.003 gi|6729726|pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Prote... 42 0.003 gi|20562909|gb|AAM22748.1| polyubiquitin 2 [Deschampsia antarctica] 42 0.004 gi|18403909|ref|NP_565812.1| ubiquitin family [Arabidopsis thali... 42 0.004 gi|28302328|gb|AAH46649.1| Similar to testis-specific gene inclu... 42 0.005 gi|70650|pir||UQNVAC ubiquitin - Autographa californica nuclear ... 41 0.008 gi|17507351|ref|NP_492717.1| Mouse NEDd8 related NED-8 (ned-8) [... 41 0.008 gi|20070031|ref|NP_613235.1| v-ubiquitin [Mamestra configurata n... 41 0.008 gi|22549552|ref|NP_689325.1| putative ubiquitin [Mamestra config... 41 0.008>gi|1857435|gb|AAB48442.1| rsc gene product [Oryctolagus cuniculus] Length = 748 Score = 112 bits (281), Expect = 2e-24 Identities = 58/76 (76%), Positives = 60/76 (78%) Frame = +1 Query: 67 MAXXXXXXXXXXXXFKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVP 246 MA FKIRMEP ETV+ LKEKIEAEKG DAFPVAGQKLIYAGKILSDDVP Sbjct: 1 MAVTITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 60 Query: 247 ICEYRIDEKNFVVVMV 294 I +YRIDEKNFVVVMV Sbjct: 61 IRDYRIDEKNFVVVMV 76>gi|4826964|ref|NP_005044.1| UV excision repair protein RAD23 homolog A; RAD23, yeast homolog, A; RAD23 homolog A [Homo sapiens] gi|1709983|sp|P54725|R23A_HUMAN UV excision repair protein RAD23 homolog A (HHR23A) gi|1082759|pir||S44443 RAD23 protein homolog2 - human gi|498146|dbj|BAA04767.1| HHR23A protein [Homo sapiens] gi|1905912|gb|AAB51177.1| human RAD23A homolog [Homo sapiens] gi|15559329|gb|AAH14026.1|AAH14026 Similar to RAD23 (S. cerevisiae) homolog A [Homo sapiens] gi|23664450|gb|AAN39383.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens] Length = 363 Score = 112 bits (280), Expect = 2e-24 Identities = 58/76 (76%), Positives = 60/76 (78%) Frame = +1 Query: 67 MAXXXXXXXXXXXXFKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVP 246 MA FKIRMEP ETV+ LKEKIEAEKG DAFPVAGQKLIYAGKILSDDVP Sbjct: 1 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 60 Query: 247 ICEYRIDEKNFVVVMV 294 I +YRIDEKNFVVVMV Sbjct: 61 IRDYRIDEKNFVVVMV 76>gi|31541878|ref|NP_080596.2| RIKEN cDNA 2310040G17 [Mus musculus] gi|26337167|dbj|BAC32268.1| unnamed protein product [Mus musculus] Length = 296 Score = 111 bits (278), Expect = 4e-24 Identities = 58/76 (76%), Positives = 59/76 (77%) Frame = +1 Query: 67 MAXXXXXXXXXXXXFKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVP 246 MA FKIRMEP ETV+ LKEKIEAEKG DAFPVAGQKLIYAGKILSDDVP Sbjct: 1 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 60 Query: 247 ICEYRIDEKNFVVVMV 294 I EY IDEKNFVVVMV Sbjct: 61 IKEYHIDEKNFVVVMV 76>gi|26332489|dbj|BAC29962.1| unnamed protein product [Mus musculus] Length = 362 Score = 111 bits (278), Expect = 4e-24 Identities = 58/76 (76%), Positives = 59/76 (77%) Frame = +1 Query: 67 MAXXXXXXXXXXXXFKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVP 246 MA FKIRMEP ETV+ LKEKIEAEKG DAFPVAGQKLIYAGKILSDDVP Sbjct: 1 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 60 Query: 247 ICEYRIDEKNFVVVMV 294 I EY IDEKNFVVVMV Sbjct: 61 IKEYHIDEKNFVVVMV 76>gi|6679605|ref|NP_033036.1| RAD23a homolog [Mus musculus] gi|1709984|sp|P54726|R23A_MOUSE UV excision repair protein RAD23 homolog A (MHR23A) gi|1044897|emb|CAA63145.1| MHR23A [Mus musculus] gi|1587277|prf||2206377A MHR23A gene Length = 363 Score = 110 bits (275), Expect = 8e-24 Identities = 57/76 (75%), Positives = 59/76 (77%) Frame = +1 Query: 67 MAXXXXXXXXXXXXFKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVP 246 MA FKIRMEP ETV+ LKEKIEAEKG DAFPVAGQKLIYAGKILSDDVP Sbjct: 1 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 60 Query: 247 ICEYRIDEKNFVVVMV 294 I +Y IDEKNFVVVMV Sbjct: 61 IRDYHIDEKNFVVVMV 76>gi|6679607|ref|NP_033037.1| RAD23b homolog [Mus musculus] gi|1709986|sp|P54728|R23B_MOUSE UV excision repair protein RAD23 homolog B (MHR23B) (XP-C repair complementing complex 58 kDa protein) (P58) gi|1044899|emb|CAA63146.1| MHR23B [Mus musculus] gi|20380714|gb|AAH27747.1| RAD23b homolog [Mus musculus] gi|1587278|prf||2206377B MHR23B gene Length = 416 Score = 102 bits (254), Expect = 2e-21 Identities = 50/62 (80%), Positives = 56/62 (89%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 FKI ++P ETV+ALKEKIE+EKG DAFPVAGQKLIYAGKILSDD + EY+IDEKNFVVV Sbjct: 13 FKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVV 72 Query: 289 MV 294 MV Sbjct: 73 MV 74>gi|18089249|gb|AAH20973.1|AAH20973 RAD23 homolog B (S. cerevisiae) [Homo sapiens] Length = 409 Score = 101 bits (251), Expect = 5e-21 Identities = 49/62 (79%), Positives = 56/62 (90%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 FKI ++P ETV+ALKEKIE+EKG DAFPVAGQKLIYAGKIL+DD + EY+IDEKNFVVV Sbjct: 13 FKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVV 72 Query: 289 MV 294 MV Sbjct: 73 MV 74>gi|4506387|ref|NP_002865.1| UV excision repair protein RAD23 homolog B; XP-C repair complementing protein; XP-C repair complementing complex 58 kDa; RAD23, yeast homolog of, B [Homo sapiens] gi|1709985|sp|P54727|R23B_HUMAN UV excision repair protein RAD23 homolog B (HHR23B) (XP-C repair complementing complex 58 kDa protein) (P58) gi|1082758|pir||S44346 RAD23 protein homolog - human gi|498148|dbj|BAA04652.1| XP-C repair complementing protein (p58/HHR23B) [Homo sapiens] gi|17384416|emb|CAD13275.1| bA131A5.1 (similar to S.cerevisiae RAD23) [Homo sapiens] gi|24414631|gb|AAN47194.1| RAD23 homolog B (S. cerevisiae) [Homo sapiens] Length = 409 Score = 101 bits (251), Expect = 5e-21 Identities = 49/62 (79%), Positives = 56/62 (90%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 FKI ++P ETV+ALKEKIE+EKG DAFPVAGQKLIYAGKIL+DD + EY+IDEKNFVVV Sbjct: 13 FKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVV 72 Query: 289 MV 294 MV Sbjct: 73 MV 74>gi|28277263|gb|AAH44089.1| Similar to RAD23 homolog B (S. cerevisiae) [Xenopus laevis] gi|28278600|gb|AAH44115.1| Similar to RAD23 homolog B (S. cerevisiae) [Xenopus laevis] Length = 412 Score = 97.8 bits (242), Expect = 5e-20 Identities = 48/62 (77%), Positives = 55/62 (88%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 FKI ++ ETV+ALKEKIE EKG+DAFPVAGQKLIYAGKIL+DD + EY+IDEKNFVVV Sbjct: 13 FKIDIDAEETVKALKEKIELEKGNDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVV 72 Query: 289 MV 294 MV Sbjct: 73 MV 74>gi|25527311|pir||JC7783 RAD 23B protein - channel catfish Length = 385 Score = 94.4 bits (233), Expect = 6e-19 Identities = 46/62 (74%), Positives = 54/62 (86%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 FKI ++ ETV+ALKEKIE EKG ++FPVAGQKLIYAGKIL+DD + EY+IDEKNFVVV Sbjct: 13 FKIDIDAEETVKALKEKIENEKGKESFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVV 72 Query: 289 MV 294 MV Sbjct: 73 MV 74>gi|30147322|ref|XP_067249.5| similar to UV excision repair protein RAD23 homolog B (HHR23B) (XP-C repair complementing complex 58 kDa protein) (P58) [Homo sapiens] Length = 258 Score = 84.3 bits (207), Expect = 6e-16 Identities = 43/61 (70%), Positives = 50/61 (81%) Frame = +1 Query: 112 KIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVVM 291 KI ++P ETV+ALKEK E+EKG A VAGQ LIYAGKIL+DD + EY+IDEKNFVVVM Sbjct: 16 KIDIDPEETVKALKEKTESEKGKVASLVAGQTLIYAGKILNDDTALKEYKIDEKNFVVVM 75 Query: 292 V 294 V Sbjct: 76 V 76>gi|26351345|dbj|BAC39309.1| unnamed protein product [Mus musculus] Length = 56 Score = 66.2 bits (160), Expect = 2e-10 Identities = 31/38 (81%), Positives = 35/38 (91%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAG 222 FKI ++P ETV+ALKEKIE+EKG DAFPVAGQKLIYAG Sbjct: 13 FKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAG 50>gi|31204639|ref|XP_311268.1| ENSANGP00000017457 [Anopheles gambiae] gi|30177792|gb|EAA06820.2| ENSANGP00000017457 [Anopheles gambiae str. PEST] Length = 344 Score = 60.5 bits (145), Expect = 1e-08 Identities = 29/53 (54%), Positives = 40/53 (74%) Frame = +1 Query: 133 ETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVVM 291 +TVR LKEK+ AE G A+PV Q+LIY GKI+ DD + +Y++D+K F+VVM Sbjct: 22 DTVRTLKEKLHAESGL-AYPVDRQRLIYLGKIMEDDHLLSQYKLDDKKFIVVM 73>gi|7446460|pir||T14337 RAD23 protein, isoform II - carrot gi|1914685|emb|CAA72742.1| RAD23 protein, isoform II [Daucus carota] Length = 379 Score = 58.2 bits (139), Expect = 5e-08 Identities = 27/62 (43%), Positives = 42/62 (67%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+IR +P++TV A+K+ IE +G D +P Q LI+ GK+L D+ + E +I E F+VV Sbjct: 13 FEIRAQPNDTVMAIKKNIEDLQGKDNYPCGQQLLIHNGKVLKDESTLAESKISEDGFLVV 72 Query: 289 MV 294 M+ Sbjct: 73 ML 74>gi|4928709|gb|AAD33695.1|AF136606_1 DHR23 [Drosophila melanogaster] Length = 414 Score = 57.0 bits (136), Expect = 1e-07 Identities = 30/62 (48%), Positives = 40/62 (64%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F I P +TV LK+KI E+G + + QKLIYAG IL+DD + Y +DEK F+VV Sbjct: 13 FTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVGSYNVDEKKFIVV 71 Query: 289 MV 294 M+ Sbjct: 72 ML 73>gi|24638591|ref|NP_651918.2| CG1836-PA [Drosophila melanogaster] gi|4928456|gb|AAD33594.1|AF132147_1 DNA repair protein Rad23 [Drosophila melanogaster] gi|7304320|gb|AAF59352.1| CG1836-PA [Drosophila melanogaster] Length = 414 Score = 57.0 bits (136), Expect = 1e-07 Identities = 30/62 (48%), Positives = 40/62 (64%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F I P +TV LK+KI E+G + + QKLIYAG IL+DD + Y +DEK F+VV Sbjct: 13 FTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVGSYNVDEKKFIVV 71 Query: 289 MV 294 M+ Sbjct: 72 ML 73>gi|25387250|pir||F96827 protein F20B17.8 [imported] - Arabidopsis thaliana gi|7715605|gb|AAF68123.1|AC010793_18 F20B17.8 [Arabidopsis thaliana] Length = 367 Score = 57.0 bits (136), Expect = 1e-07 Identities = 25/62 (40%), Positives = 42/62 (67%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+IR+ P +T+ A+K+ IE +G D +P Q LI+ GK+L D+ + E ++ E+ F+VV Sbjct: 13 FEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVV 72 Query: 289 MV 294 M+ Sbjct: 73 ML 74>gi|22330746|ref|NP_565216.2| DNA repair protein RAD23 -related [Arabidopsis thaliana] gi|14334442|gb|AAK59419.1| putative DNA repair protein RAD23 [Arabidopsis thaliana] gi|17104777|gb|AAL34277.1| putative DNA repair protein RAD23 [Arabidopsis thaliana] Length = 365 Score = 57.0 bits (136), Expect = 1e-07 Identities = 25/62 (40%), Positives = 42/62 (67%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+IR+ P +T+ A+K+ IE +G D +P Q LI+ GK+L D+ + E ++ E+ F+VV Sbjct: 13 FEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVV 72 Query: 289 MV 294 M+ Sbjct: 73 ML 74>gi|30409720|dbj|BAC76390.1| RAD23-like protein [Arabidopsis thaliana] Length = 365 Score = 57.0 bits (136), Expect = 1e-07 Identities = 25/62 (40%), Positives = 42/62 (67%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+IR+ P +T+ A+K+ IE +G D +P Q LI+ GK+L D+ + E ++ E+ F+VV Sbjct: 13 FEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVV 72 Query: 289 MV 294 M+ Sbjct: 73 ML 74>gi|30409718|dbj|BAC76389.1| RAD23-like protein [Arabidopsis thaliana] Length = 371 Score = 57.0 bits (136), Expect = 1e-07 Identities = 25/62 (40%), Positives = 42/62 (67%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+IR+ P +T+ A+K+ IE +G D +P Q LI+ GK+L D+ + E ++ E+ F+VV Sbjct: 13 FEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVV 72 Query: 289 MV 294 M+ Sbjct: 73 ML 74>gi|30699439|ref|NP_850982.1| DNA repair protein RAD23 -related [Arabidopsis thaliana] gi|21593616|gb|AAM65583.1| DNA repair protein RAD23, putative [Arabidopsis thaliana] Length = 371 Score = 57.0 bits (136), Expect = 1e-07 Identities = 25/62 (40%), Positives = 42/62 (67%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+IR+ P +T+ A+K+ IE +G D +P Q LI+ GK+L D+ + E ++ E+ F+VV Sbjct: 13 FEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVV 72 Query: 289 MV 294 M+ Sbjct: 73 ML 74>gi|15232924|ref|NP_186903.1| RAD23 -related [Arabidopsis thaliana] gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis thaliana] gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17 [Arabidopsis thaliana] gi|21360453|gb|AAM47342.1| AT3g02540/F16B3_17 [Arabidopsis thaliana] gi|30409724|dbj|BAC76392.1| RAD23-like protein [Arabidopsis thaliana] Length = 419 Score = 56.6 bits (135), Expect = 1e-07 Identities = 24/62 (38%), Positives = 44/62 (70%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+I ++P ++V +K+ IE+ +G+D +P A Q LI+ GK+L D+ I E ++ E +F+V+ Sbjct: 13 FEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVI 72 Query: 289 MV 294 M+ Sbjct: 73 MM 74>gi|5640111|emb|CAB51544.1| RAD23 protein [Lycopersicon esculentum] Length = 389 Score = 55.5 bits (132), Expect = 3e-07 Identities = 24/62 (38%), Positives = 42/62 (67%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+I ++P ++V +K+ IE+ +G D +P A Q LI+ GK+L D + E ++ E +FVV+ Sbjct: 13 FEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDTTTLEENKVAENSFVVI 72 Query: 289 MV 294 M+ Sbjct: 73 ML 74>gi|28920452|gb|EAA29819.1| hypothetical protein [Neurospora crassa] Length = 408 Score = 54.3 bits (129), Expect = 7e-07 Identities = 28/62 (45%), Positives = 41/62 (65%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F + +EP ET+ +K+KI E+G + QKLIY+GKIL D+ + Y+I+EK FVV Sbjct: 38 FTLEIEPTETISKVKQKISEERG---WAPELQKLIYSGKILKDEETVESYKIEEKGFVVC 94 Query: 289 MV 294 +V Sbjct: 95 VV 96>gi|15221013|ref|NP_173070.1| DNA repair protein RAD23, putative [Arabidopsis thaliana] Length = 368 Score = 54.3 bits (129), Expect = 7e-07 Identities = 24/62 (38%), Positives = 41/62 (65%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+IR+ P +T+ A+K+ IE + D +P Q LI+ GK+L D+ + E ++ E+ F+VV Sbjct: 13 FEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVV 72 Query: 289 MV 294 M+ Sbjct: 73 ML 74>gi|25518044|pir||G86296 T24D18.27 protein - Arabidopsis thaliana gi|6587822|gb|AAF18513.1|AC010924_26 Contains similarity to gb|Y12014 RAD23 protein isoform II from Daucus carota and is a member of the Ubiquitin PF|00240 family containing a UBA PF|00627 domain. EST gb|H37284 comes from this gene. [Arabidopsis thaliana] Length = 246 Score = 54.3 bits (129), Expect = 7e-07 Identities = 24/62 (38%), Positives = 41/62 (65%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+IR+ P +T+ A+K+ IE + D +P Q LI+ GK+L D+ + E ++ E+ F+VV Sbjct: 13 FEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVV 72 Query: 289 MV 294 M+ Sbjct: 73 ML 74>gi|7446459|pir||T14336 RAD23 protein, isoform I - carrot gi|1914683|emb|CAA72741.1| RAD23, isoform I [Daucus carota] Length = 382 Score = 53.9 bits (128), Expect = 9e-07 Identities = 23/62 (37%), Positives = 39/62 (62%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+I++ P ++V +K IE +G+ +P A Q LIY GK+L D + E + E +F+V+ Sbjct: 13 FEIQVNPDDSVADVKRSIETAQGAAVYPAAQQMLIYQGKVLKDGTTLLENNVAENSFIVI 72 Query: 289 MV 294 M+ Sbjct: 73 ML 74>gi|30409722|dbj|BAC76391.1| RAD23-like protein [Arabidopsis thaliana] Length = 366 Score = 49.3 bits (116), Expect = 2e-05 Identities = 24/62 (38%), Positives = 40/62 (63%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+IR+ P T+ A+K+ IE + D +P Q LI+ GK+L D+ + E ++ E+ F+VV Sbjct: 13 FEIRVLP--TIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVV 70 Query: 289 MV 294 M+ Sbjct: 71 ML 72>gi|17537797|ref|NP_496488.1| Ubiquitin family UBA TS-N domain [Caenorhabditis elegans] gi|7511023|pir||T27774 hypothetical protein ZK20.3 - Caenorhabditis elegans gi|3881546|emb|CAA93780.1| Hypothetical protein ZK20.3 [Caenorhabditis elegans] Length = 372 Score = 48.9 bits (115), Expect = 3e-05 Identities = 26/62 (41%), Positives = 35/62 (55%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F + + +T+ +K + +EKG D P QKLIY GKIL D V + E D FVVV Sbjct: 64 FNLELNEDQTIAEVKALVASEKGDDYAPEL-QKLIYNGKILDDSVKVGEVGFDSSKFVVV 122 Query: 289 MV 294 M+ Sbjct: 123 ML 124>gi|19113023|ref|NP_596231.1| nucleotide excision repair protein yeast rad23/ human HHR23A homolog [Schizosaccharomyces pombe] gi|21542214|sp|O74803|RH23_SCHPO UV excision repair protein rhp23 (RAD23 homolog) gi|7493592|pir||T40115 uv excision repair protein rad23 homolog - fission yeast (Schizosaccharomyces pombe) gi|3687502|emb|CAA21170.1| SPBC2D10.12 [Schizosaccharomyces pombe] gi|5805388|gb|AAD51975.1|AF174293_1 Rhp23 [Schizosaccharomyces pombe] Length = 368 Score = 48.1 bits (113), Expect = 5e-05 Identities = 24/52 (46%), Positives = 36/52 (69%) Frame = +1 Query: 139 VRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVVMV 294 + LKEKI+ ++ + V QKLIY+G+IL+DD + EY I E++F+V MV Sbjct: 24 ISELKEKIQTQQN---YEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCMV 72>gi|30409730|dbj|BAC76395.1| RAD23-like protein [Arabidopsis thaliana] Length = 343 Score = 47.8 bits (112), Expect = 6e-05 Identities = 23/62 (37%), Positives = 40/62 (64%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+I ++P + V +K IE KG++ +P A Q LI+ GK+L D+ + E + E +F+V+ Sbjct: 13 FEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVI 71 Query: 289 MV 294 M+ Sbjct: 72 ML 73>gi|15240922|ref|NP_198663.1| DNA repair protein RAD23, putative [Arabidopsis thaliana] gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana] gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis thaliana] gi|19548081|gb|AAL87405.1| At5g38470/At5g38470 [Arabidopsis thaliana] gi|21593157|gb|AAM65106.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana] gi|30409728|dbj|BAC76394.1| RAD23-like protein [Arabidopsis thaliana] Length = 378 Score = 47.8 bits (112), Expect = 6e-05 Identities = 23/62 (37%), Positives = 40/62 (64%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+I ++P + V +K IE KG++ +P A Q LI+ GK+L D+ + E + E +F+V+ Sbjct: 13 FEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVI 71 Query: 289 MV 294 M+ Sbjct: 72 ML 73>gi|14335004|gb|AAK59766.1| unknown protein [Arabidopsis thaliana] Length = 378 Score = 47.8 bits (112), Expect = 6e-05 Identities = 23/62 (37%), Positives = 40/62 (64%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+I ++P + V +K IE KG++ +P A Q LI+ GK+L D+ + E + E +F+V+ Sbjct: 13 FEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVI 71 Query: 289 MV 294 M+ Sbjct: 72 ML 73>gi|7446462|pir||T04150 RAD23 protein homolog - rice gi|1488297|gb|AAB65841.1| osRAD23 [Oryza sativa] Length = 392 Score = 45.8 bits (107), Expect = 2e-04 Identities = 21/62 (33%), Positives = 37/62 (58%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 F+I ++ + V +K IE +G +P Q LI+ GK+L DD + E ++ E +F+V+ Sbjct: 13 FQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVI 72 Query: 289 MV 294 M+ Sbjct: 73 ML 74>gi|21355163|ref|NP_651212.1| CG10694-PA [Drosophila melanogaster] gi|7301100|gb|AAF56234.1| CG10694-PA [Drosophila melanogaster] gi|19527925|gb|AAL90077.1| AT15685p [Drosophila melanogaster] Length = 290 Score = 45.4 bits (106), Expect = 3e-04 Identities = 23/59 (38%), Positives = 35/59 (58%) Frame = +1 Query: 115 IRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVVM 291 + M + VRALK+K+ A P +LIY+G+I+ D +P+ EYRI E +V+M Sbjct: 15 LEMNESQEVRALKQKL-GNLPEVAMPAENLQLIYSGRIMEDAMPLSEYRIAEDKIIVLM 72>gi|10177007|dbj|BAB10195.1| gene_id:K5J14.2~pir||T30561~similar to unknown protein [Arabidopsis thaliana] Length = 902 Score = 44.7 bits (104), Expect = 5e-04 Identities = 22/62 (35%), Positives = 38/62 (60%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 + ++ +ETV KEKI +E G PV Q+LI+ G++L DD P+ EY ++ + + + Sbjct: 59 YTFQVNKNETVLLFKEKIASETG---VPVGQQRLIFRGRVLKDDHPLSEYHLENGHTLHL 115 Query: 289 MV 294 +V Sbjct: 116 IV 117>gi|30694012|ref|NP_199037.2| ubiquitin family [Arabidopsis thaliana] gi|22654985|gb|AAM98085.1| AT5g42220/K5J14_2 [Arabidopsis thaliana] gi|30102508|gb|AAP21172.1| AT5g42220/K5J14_2 [Arabidopsis thaliana] Length = 879 Score = 44.7 bits (104), Expect = 5e-04 Identities = 22/62 (35%), Positives = 38/62 (60%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFVVV 288 + ++ +ETV KEKI +E G PV Q+LI+ G++L DD P+ EY ++ + + + Sbjct: 36 YTFQVNKNETVLLFKEKIASETG---VPVGQQRLIFRGRVLKDDHPLSEYHLENGHTLHL 92 Query: 289 MV 294 +V Sbjct: 93 IV 94>gi|30409726|dbj|BAC76393.1| RAD23-like protein [Arabidopsis thaliana] Length = 337 Score = 43.9 bits (102), Expect = 0.001 Identities = 18/44 (40%), Positives = 32/44 (71%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDD 240 F+I ++P ++V +K+ IE+ +G+D +P A Q LI+ GK+L D+ Sbjct: 13 FEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDE 56>gi|7862066|gb|AAF70460.1|AF240445_1 polyubiquitin [Populus tremula x Populus tremuloides] Length = 154 Score = 43.1 bits (100), Expect = 0.002 Identities = 21/52 (40%), Positives = 34/52 (65%) Frame = +1 Query: 112 KIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRID 267 +I +EP++T+ +KE++E ++G P Q+LIYAGK L DD +Y I+ Sbjct: 90 EIDIEPNDTIDRIKERVEEKEG---IPPVQQRLIYAGKQLGDDKTARDYNIE 138>gi|6323932|ref|NP_014003.1| Required with RAD23 for duplication of the spindle pole body; Dsk2p [Saccharomyces cerevisiae] gi|1078532|pir||S54583 ubiquitin-like protein DSK2 - yeast (Saccharomyces cerevisiae) gi|825542|emb|CAA89774.1| unknown [Saccharomyces cerevisiae] Length = 373 Score = 43.1 bits (100), Expect = 0.002 Identities = 23/58 (39%), Positives = 32/58 (54%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFV 282 +++ + P TV KE I G PVA Q+LIY+GKIL DD + Y I + + V Sbjct: 14 WEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSV 68>gi|1352321|sp|P48510|DSK2_YEAST Ubiquitin-like protein DSK2 gi|786151|gb|AAB07267.1| ubiquitin-like protein [Saccharomyces cerevisiae] Length = 373 Score = 43.1 bits (100), Expect = 0.002 Identities = 23/58 (39%), Positives = 32/58 (54%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFV 282 +++ + P TV KE I G PVA Q+LIY+GKIL DD + Y I + + V Sbjct: 14 WEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSV 68>gi|30692436|ref|NP_564379.2| ubiquitin family [Arabidopsis thaliana] gi|25294249|pir||C86439 protein T19E23.13 [imported] - Arabidopsis thaliana gi|6692129|gb|AAF24594.1|AC007654_10 T19E23.13 [Arabidopsis thaliana] gi|28973676|gb|AAO64156.1| putative ubiquitin (AtRUB1) [Arabidopsis thaliana] gi|29824269|gb|AAP04095.1| putative ubiquitin (AtRUB1) [Arabidopsis thaliana] Length = 156 Score = 42.4 bits (98), Expect = 0.003 Identities = 21/52 (40%), Positives = 34/52 (65%) Frame = +1 Query: 112 KIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRID 267 +I +EP +T+ +KE++E ++G P Q+LIYAGK L+DD +Y I+ Sbjct: 90 EIDIEPTDTIDRIKERVEEKEG---IPPVQQRLIYAGKQLADDKTAKDYNIE 138>gi|6729726|pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76 Score = 42.4 bits (98), Expect = 0.003 Identities = 21/52 (40%), Positives = 34/52 (65%) Frame = +1 Query: 112 KIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRID 267 +I +EP +T+ +KE++E ++G P Q+LIYAGK L+DD +Y I+ Sbjct: 14 EIDIEPTDTIDRIKERVEEKEG---IPPVQQRLIYAGKQLADDKTAKDYNIE 62>gi|20562909|gb|AAM22748.1| polyubiquitin 2 [Deschampsia antarctica] Length = 153 Score = 42.0 bits (97), Expect = 0.004 Identities = 21/52 (40%), Positives = 34/52 (65%) Frame = +1 Query: 112 KIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRID 267 +I +EP +T+ +KE++E ++G P Q+LIYAGK L+DD +Y I+ Sbjct: 90 EIDIEPTDTIDRVKERVEEKEG---IPPVQQRLIYAGKQLADDKTAKDYNIE 138>gi|18403909|ref|NP_565812.1| ubiquitin family [Arabidopsis thaliana] gi|1362009|pir||S55242 polyubiquitin 2 - Arabidopsis thaliana gi|18650605|gb|AAL75902.1| At1g31340/T19E23_4 [Arabidopsis thaliana] gi|20147417|gb|AAM10418.1| At1g31340/T19E23_4 [Arabidopsis thaliana] gi|20197530|gb|AAM15116.1| ubiquitin-like UBQ7/AtRUB2, putative [Arabidopsis thaliana] gi|26452375|dbj|BAC43273.1| ubiquitin-like protein [Arabidopsis thaliana] Length = 154 Score = 42.0 bits (97), Expect = 0.004 Identities = 21/52 (40%), Positives = 34/52 (65%) Frame = +1 Query: 112 KIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRID 267 +I +EP +T+ +KE++E ++G P Q+LIYAGK L+DD +Y I+ Sbjct: 90 EIDIEPTDTIDRIKERVEEKEG---IPPVQQRLIYAGKQLADDKTAKDYAIE 138>gi|28302328|gb|AAH46649.1| Similar to testis-specific gene including a ubiquitin-likely domain [Xenopus laevis] Length = 693 Score = 41.6 bits (96), Expect = 0.005 Identities = 22/54 (40%), Positives = 32/54 (58%) Frame = +1 Query: 109 FKIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDE 270 F++R+ PHETV ++K KI+ +G PVA Q LI+ L D+ + Y I E Sbjct: 40 FELRVSPHETVASVKSKIQRLEG---IPVAQQHLIWNNMELEDECSLSGYNISE 90>gi|70650|pir||UQNVAC ubiquitin - Autographa californica nuclear polyhedrosis virus gi|332489|gb|AAA46751.1| ubiquitin-like protein Length = 77 Score = 40.8 bits (94), Expect = 0.008 Identities = 22/51 (43%), Positives = 32/51 (62%) Frame = +1 Query: 124 EPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKN 276 EP ETV LK+KI ++G PV Q+LI+AGK L D + +Y I +++ Sbjct: 18 EPEETVADLKQKIADKEG---VPVDQQRLIFAGKQLEDSKTMADYNIQKES 65>gi|17507351|ref|NP_492717.1| Mouse NEDd8 related NED-8 (ned-8) [Caenorhabditis elegans] gi|7503500|pir||T22249 hypothetical protein F45H11.2 - Caenorhabditis elegans gi|3877261|emb|CAB01708.1| C. elegans NED-8 protein (corresponding sequence F45H11.2) [Caenorhabditis elegans] Length = 77 Score = 40.8 bits (94), Expect = 0.008 Identities = 18/51 (35%), Positives = 34/51 (66%) Frame = +1 Query: 112 KIRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRI 264 ++ +EP++ V +KEK+E ++G P Q+LI+AGK ++DD +Y++ Sbjct: 14 ELDIEPNDRVERIKEKVEEKEG---IPPPQQRLIFAGKQMNDDKTAADYKV 61>gi|20070031|ref|NP_613235.1| v-ubiquitin [Mamestra configurata nucleopolyhedrovirus A] gi|20043425|gb|AAM09260.1| v-ubiquitin [Mamestra configurata nucleopolyhedrovirus] Length = 100 Score = 40.8 bits (94), Expect = 0.008 Identities = 21/56 (37%), Positives = 34/56 (60%) Frame = +1 Query: 115 IRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFV 282 + +EP +TV LK+KI ++G P Q+LIYAGK L D + +Y I +++ + Sbjct: 15 VEVEPTDTVEQLKQKITDKEG---IPPDQQRLIYAGKQLEDSSTMSDYNIQKESTI 67>gi|22549552|ref|NP_689325.1| putative ubiquitin [Mamestra configurata nucleopolyhedrovirus B] gi|22476731|gb|AAM95137.1| putative ubiquitin [Mamestra configurata nucleopolyhedrovirus B] Length = 100 Score = 40.8 bits (94), Expect = 0.008 Identities = 21/56 (37%), Positives = 34/56 (60%) Frame = +1 Query: 115 IRMEPHETVRALKEKIEAEKGSDAFPVAGQKLIYAGKILSDDVPICEYRIDEKNFV 282 + +EP +TV LK+KI ++G P Q+LIYAGK L D + +Y I +++ + Sbjct: 15 VEVEPTDTVEQLKQKITDKEG---IPPDQQRLIYAGKQLEDSSTMSDYNIQKESTI 67Database: nr Posted date: Jun 26, 2003 10:46 AM Number of letters in database: 468,778,868 Number of sequences in database: 1,459,938 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 292,100,842 Number of Sequences: 1459938 Number of extensions: 4496290 Number of successful extensions: 13396 Number of sequences better than 5.0e-02: 120 Number of HSP's better than 0.1 without gapping: 13062 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 13367 length of database: 468,778,868 effective HSP length: 113 effective length of database: 303,805,874 effective search space used: 13671264330 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)