GEISHA BLASTX report for 67E

GEISHA BLASTX report for 67E_T7

BLASTX search performed Thu Sep 4 16:39:16 2003
gi|31982087|ref|NP_766193.2| RIKEN cDNA 4732418C03 [Mus musculus...   264   1e-69
gi|26329049|dbj|BAC28263.1| unnamed protein product [Mus musculus]    259   3e-68
gi|27702577|ref|XP_224400.1| similar to hypothetical protein FLJ...   242   4e-63
gi|26324558|dbj|BAC26033.1| unnamed protein product [Mus musculus]    211   7e-54
gi|21358245|ref|NP_648724.1| CG13472-PA [Drosophila melanogaster...    55   9e-07
gi|5032113|ref|NP_005862.1| splicing factor 30, survival of moto...    53   6e-06
gi|27690071|ref|XP_213506.1| similar to splicing factor 30, surv...    52   1e-05
gi|27369569|ref|NP_766017.1| RIKEN cDNA 2410004J23 [Mus musculus...    52   1e-05
gi|18859385|ref|NP_571266.1| survival motor neuron [Danio rerio]...    49   8e-05
gi|3450887|gb|AAC32608.1| survival motor neuron protein [Danio r...    48   2e-04
gi|15809658|gb|AAL07278.1| survival motor neuron [Xenopus laevis]      48   2e-04
gi|28279202|gb|AAH45967.1| Similar to splicing factor 30, surviv...    47   3e-04
gi|27924238|gb|AAH45073.1| Unknown (protein for IMAGE:5542088) [...    47   3e-04
gi|13259512|ref|NP_075012.1| survival of motor neuron 1, telomer...    46   5e-04
gi|13259527|ref|NP_075013.1| survival of motor neuron 2, centrom...    46   5e-04
gi|736411|gb|AAA64505.1| putative open reading frame; duplicate ...    46   5e-04
gi|13259531|ref|NP_075015.1| survival of motor neuron 2, centrom...    46   5e-04
gi|4507091|ref|NP_000335.1| survival of motor neuron 1, telomeri...    46   5e-04
gi|13183642|gb|AAK15281.1| survival motor neuron protein [Gallus...    45   0.001
gi|28849927|ref|NP_783632.1| survival of motor neuron 1, telomer...    45   0.001
gi|27462896|gb|AAO15639.1|AF466193_1 survival motor neuron prote...    45   0.001
gi|27462898|gb|AAO15640.1|AF466194_1 survival motor neuron prote...    45   0.001
gi|27447276|gb|AAM18209.1| survival of motor neuron [Felis catus]      45   0.002
gi|15021902|dbj|BAB62226.1| tudor protein [Xenopus laevis]             44   0.004
gi|2832313|gb|AAC01747.1| survival motor neuron [Rattus norvegicus]    44   0.004
gi|11968084|ref|NP_071954.1| survival motor neuron [Rattus norve...    44   0.004
gi|31075799|gb|AAP42462.1| survival motor neuron [Canis familiaris]    43   0.005
gi|3024614|sp|O02771|SMN_CANFA Survival motor neuron protein >gi...    43   0.005
gi|6755580|ref|NP_035550.1| survival motor neuron [Mus musculus]...    43   0.005
gi|26023801|gb|AAN77614.1| survival of motor neuron protein [Mus...    43   0.005
gi|1588319|prf||2208336A SMN gene                                      42   0.008
gi|13878217|ref|NP_113564.1| tudor domain containing 1 [Mus musc...    42   0.008
gi|21670847|dbj|BAC02433.1| tudor repeat protein [Mus musculus]        42   0.008
gi|26325742|dbj|BAC26625.1| unnamed protein product [Mus musculus]     42   0.008
gi|14278178|pdb|1G5V|A Chain A, Solution Structure Of The Tudor ...    42   0.010
gi|29726468|pdb|1MHN|A Chain A, High Resolution Crystal Structur...    42   0.010
gi|15077042|gb|AAK83042.1|AF287470_1 survival motor neuron prote...    42   0.013
gi|12584630|emb|CAC27400.1| survival motor neuron protein [Plati...    41   0.023
gi|27659748|ref|XP_217641.1| similar to tudor repeat protein [Mu...    40   0.030
gi|31213491|ref|XP_315689.1| ENSANGP00000021797 [Anopheles gambi...    40   0.039
gi|18000289|gb|AAL54906.1| survival motor neuron-like protein [L...    40   0.039

>gi|13540576|ref|NP_110421.1| tudor domain containing 3 [Homo sapiens]
 gi|29337133|sp|Q9H7E2|TDR3_HUMAN Tudor domain containing protein 3
 gi|10436992|dbj|BAB14950.1| unnamed protein product [Homo sapiens]
 gi|20987779|gb|AAH30514.1| hypothetical protein FLJ21007 [Homo sapiens]
 gi|31873932|emb|CAD97894.1| hypothetical protein [Homo sapiens]
          Length = 651

 Score =  275 bits (702), Expect = 7e-73
 Identities = 136/208 (65%), Positives = 158/208 (75%), Gaps = 1/208 (0%)
 Frame = +1

Query: 1    ENQIHNSENFCDRKARTISNETFM-VKSEQHFGVNNDYQNPCRTDNFNSIPNGDTEHHQK 177
            E+Q    + F DRK++TI+NE F  +K E+HF VN DYQNP R+++F  +PNG+ E   K
Sbjct: 444  ESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTDYQNPVRSNSFIGVPNGEVEMPLK 503

Query: 178  GRRVGPIKLSGPTVIPSYDDKILYYNTGPKRRSGPIKPEKIMEPSIHAEYGKTWRPGDEC 357
            GRR+GPIK +GP      DDKI +YN+GPKRRSGPIKPEKI+E SI  EY K W+PGDEC
Sbjct: 504  GRRIGPIKPAGPVTAVPCDDKI-FYNSGPKRRSGPIKPEKILESSIPMEYAKMWKPGDEC 562

Query: 358  FALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPIHADXXXXXXXXXXX 537
            FALYWEDNKFYRAEVEALHSSGMTAVVKF DYGNYEEVLLSNI+PI  +           
Sbjct: 563  FALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE-AWEEEGTYDQ 621

Query: 538  XXXFRRGGDGQPRRSTRPTQQFYQAPKS 621
               FRRGGDGQPRRSTRPTQQFYQ P++
Sbjct: 622  TLEFRRGGDGQPRRSTRPTQQFYQPPRA 649



>gi|31982087|ref|NP_766193.2| RIKEN cDNA 4732418C03 [Mus musculus]
 gi|29337107|sp|Q91W18|TDR3_MOUSE Tudor domain containing protein 3
 gi|13784943|gb|AAH05670.3| RIKEN cDNA 4732418C03 [Mus musculus]
          Length = 650

 Score =  264 bits (675), Expect = 1e-69
 Identities = 130/208 (62%), Positives = 158/208 (75%), Gaps = 1/208 (0%)
 Frame = +1

Query: 1    ENQIHNSENFCDRKARTISNETFM-VKSEQHFGVNNDYQNPCRTDNFNSIPNGDTEHHQK 177
            ENQ  + ++  +RK RT+++E F  +K E+HF VN DY +P ++++   +PNG+T    K
Sbjct: 444  ENQTGHPDHCYERKPRTMNSEAFSGLKIEKHFSVNTDYPSPVQSNSLG-VPNGETAPPLK 502

Query: 178  GRRVGPIKLSGPTVIPSYDDKILYYNTGPKRRSGPIKPEKIMEPSIHAEYGKTWRPGDEC 357
            GRRVGPIK +GP     YDDKI +YN+GPKRRSGPIKPEK++E SI  EY K W+PGDEC
Sbjct: 503  GRRVGPIKSAGPVTAVPYDDKI-FYNSGPKRRSGPIKPEKVIESSIPVEYAKVWKPGDEC 561

Query: 358  FALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPIHADXXXXXXXXXXX 537
            FALYWEDNKFYRAEVEALHSSGMTAVVKF+DYGNYEEVLLSNI+P+  +           
Sbjct: 562  FALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE-AWEEEGTYDH 620

Query: 538  XXXFRRGGDGQPRRSTRPTQQFYQAPKS 621
               FRRGGDGQPRRSTRPTQQFYQ P++
Sbjct: 621  TIEFRRGGDGQPRRSTRPTQQFYQPPRA 648



>gi|26329049|dbj|BAC28263.1| unnamed protein product [Mus musculus]
          Length = 650

 Score =  259 bits (662), Expect = 3e-68
 Identities = 128/208 (61%), Positives = 155/208 (73%), Gaps = 1/208 (0%)
 Frame = +1

Query: 1    ENQIHNSENFCDRKARTISNETFM-VKSEQHFGVNNDYQNPCRTDNFNSIPNGDTEHHQK 177
            ENQ  + ++  +RK RT+++E    +K E+HF VN DY  P ++++   +PNG+T    K
Sbjct: 444  ENQTGHPDHCYERKPRTMNSEAVSGLKIEKHFSVNTDYPRPVQSNSLG-VPNGETAPPLK 502

Query: 178  GRRVGPIKLSGPTVIPSYDDKILYYNTGPKRRSGPIKPEKIMEPSIHAEYGKTWRPGDEC 357
            GRRVGPIK +GP     YDDKI +YN+GPKRRSGPIKPEK++E SI  EY K W+PGDEC
Sbjct: 503  GRRVGPIKSAGPVTAVPYDDKI-FYNSGPKRRSGPIKPEKVIESSIPVEYAKVWKPGDEC 561

Query: 358  FALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPIHADXXXXXXXXXXX 537
            FALYWEDNKFYRAEVEALHSSGMT VVKF+DYGNYEEVLLSNI+P+  +           
Sbjct: 562  FALYWEDNKFYRAEVEALHSSGMTEVVKFTDYGNYEEVLLSNIKPVQTE-AWEEEGTYDH 620

Query: 538  XXXFRRGGDGQPRRSTRPTQQFYQAPKS 621
               FRRGGDGQPRRSTRPTQQFYQ P++
Sbjct: 621  TIEFRRGGDGQPRRSTRPTQQFYQPPRA 648



>gi|27702577|ref|XP_224400.1| similar to hypothetical protein
           FLJ21007 [Homo sapiens] [Rattus norvegicus]
          Length = 567

 Score =  242 bits (618), Expect = 4e-63
 Identities = 113/169 (66%), Positives = 138/169 (80%), Gaps = 1/169 (0%)
 Frame = +1

Query: 1   ENQIHNSENFCDRKARTISNETFM-VKSEQHFGVNNDYQNPCRTDNFNSIPNGDTEHHQK 177
           ENQ  N ++F DRK+RT+++E F  +K E+HF  N DYQNP ++++F  +PNG+T+   K
Sbjct: 393 ENQTSNPDHFYDRKSRTMNSEAFSGLKIEKHFSANTDYQNPVQSNSFVGVPNGETDMPMK 452

Query: 178 GRRVGPIKLSGPTVIPSYDDKILYYNTGPKRRSGPIKPEKIMEPSIHAEYGKTWRPGDEC 357
           GRRVGPIK +GP     YDDKI +YN+GPKRRSGPIKPEK++E SI  EY K W+PGDEC
Sbjct: 453 GRRVGPIKPAGPVTAVPYDDKI-FYNSGPKRRSGPIKPEKVIESSIPVEYAKMWKPGDEC 511

Query: 358 FALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPIHAD 504
           FALYWEDNKFYRAEVEALHSSGMTAVVKF+DYGNYEEVLLSNI+P+  +
Sbjct: 512 FALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE 560



>gi|26324558|dbj|BAC26033.1| unnamed protein product [Mus musculus]
          Length = 163

 Score =  211 bits (538), Expect = 7e-54
 Identities = 99/144 (68%), Positives = 117/144 (80%)
 Frame = +1

Query: 73  VKSEQHFGVNNDYQNPCRTDNFNSIPNGDTEHHQKGRRVGPIKLSGPTVIPSYDDKILYY 252
           +K E+HF VN DY  P ++++   +PNG+T    KGRRVGPIK +GP     YDDKI +Y
Sbjct: 9   LKIEKHFSVNTDYPRPVQSNSLG-VPNGETAPPLKGRRVGPIKSAGPVTAVPYDDKI-FY 66

Query: 253 NTGPKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTA 432
           N+GPKRRSGPIKPEK++E SI  EY K W+PGDECFALYWEDNKFYRAEVEALHSSGMTA
Sbjct: 67  NSGPKRRSGPIKPEKVIESSIPVEYAKVWKPGDECFALYWEDNKFYRAEVEALHSSGMTA 126

Query: 433 VVKFSDYGNYEEVLLSNIRPIHAD 504
           VVKF+DYGNYEEVLLSNI+P+  +
Sbjct: 127 VVKFTDYGNYEEVLLSNIKPVQTE 150



>gi|21358245|ref|NP_648724.1| CG13472-PA [Drosophila melanogaster]
 gi|7294355|gb|AAF49703.1| CG13472-PA [Drosophila melanogaster]
 gi|17862868|gb|AAL39911.1| RE01471p [Drosophila melanogaster]
          Length = 836

 Score = 55.5 bits (132), Expect = 9e-07
 Identities = 26/53 (49%), Positives = 34/53 (64%)
 Frame = +1

Query: 337 WRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPI 495
           W+ GD C A YW+D ++Y AE+  +  S  T VV F  YGN+EEVL  +I PI
Sbjct: 732 WQKGDLCMAKYWDDGRYYEAEITGV--SEKTCVVFFMGYGNHEEVLKVDILPI 782



>gi|5032113|ref|NP_005862.1| splicing factor 30, survival of motor
           neuron-related [Homo sapiens]
 gi|3746842|gb|AAC64086.1| 30kDa splicing factor; SPF 30 [Homo sapiens]
 gi|3986748|gb|AAC84148.1| splicing factor [Homo sapiens]
 gi|15029993|gb|AAH11234.1|AAH11234 Similar to splicing factor 30, survival of motor neuron-related
           [Homo sapiens]
          Length = 238

 Score = 52.8 bits (125), Expect = 6e-06
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +1

Query: 334 TWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPI 495
           +W+ GD+C A++ ED + Y AE+E +     TA + F+ YGN E   L N++P+
Sbjct: 72  SWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPV 125



>gi|27690071|ref|XP_213506.1| similar to splicing factor 30,
           survival of motor neuron-related [Homo sapiens] [Rattus
           norvegicus]
          Length = 170

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +1

Query: 334 TWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPI 495
           +W+ GD+C A++ ED + Y AE+E +     TA + F+ YGN E   L N++P+
Sbjct: 72  SWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNLKPV 125



>gi|27369569|ref|NP_766017.1| RIKEN cDNA 2410004J23 [Mus musculus]
 gi|26347531|dbj|BAC37414.1| unnamed protein product [Mus musculus]
 gi|26354875|dbj|BAC41064.1| unnamed protein product [Mus musculus]
          Length = 238

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +1

Query: 334 TWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPI 495
           +W+ GD+C A++ ED + Y AE+E +     TA + F+ YGN E   L N++P+
Sbjct: 72  SWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNLKPV 125



>gi|18859385|ref|NP_571266.1| survival motor neuron [Danio rerio]
 gi|7674338|sp|Q9W6S8|SMN_BRARE Survival motor neuron protein
 gi|4753666|emb|CAB41938.1| SMN protein [Danio rerio]
          Length = 281

 Score = 48.9 bits (115), Expect = 8e-05
 Identities = 26/78 (33%), Positives = 40/78 (50%)
 Frame = +1

Query: 253 NTGPKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTA 432
           N G KR++      +      +A   K W+ GD C+A + ED   Y A + ++     T 
Sbjct: 56  NPGKKRKNNKKNKSR---KRCNAAPDKEWQVGDSCYAFWSEDGNLYTATITSVDQEKGTC 112

Query: 433 VVKFSDYGNYEEVLLSNI 486
           VV ++DYGN EE  LS++
Sbjct: 113 VVFYTDYGNEEEQNLSDL 130



>gi|3450887|gb|AAC32608.1| survival motor neuron protein [Danio
           rerio]
          Length = 285

 Score = 47.8 bits (112), Expect = 2e-04
 Identities = 28/78 (35%), Positives = 40/78 (50%)
 Frame = +1

Query: 253 NTGPKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTA 432
           N G KR++   K  K  +    A   K W+ GD C+A + ED   Y A + +      T 
Sbjct: 56  NPGKKRKNN--KKNKSRKRCTAAP-DKEWQVGDSCYAFWSEDGNLYTATITSFDQEKGTC 112

Query: 433 VVKFSDYGNYEEVLLSNI 486
           VV ++DYGN EE  LS++
Sbjct: 113 VVFYTDYGNEEEQNLSDL 130



>gi|15809658|gb|AAL07278.1| survival motor neuron [Xenopus laevis]
          Length = 282

 Score = 47.8 bits (112), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 32/53 (59%)
 Frame = +1

Query: 331 KTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIR 489
           K WR GD C A++ ED   Y A + ++ +   T +V +S YGN EE  L+++R
Sbjct: 83  KKWRIGDTCNAVWSEDGNIYSATISSIDAKRRTCIVVYSGYGNSEEHSLADLR 135



>gi|28279202|gb|AAH45967.1| Similar to splicing factor 30, survival
           of motor neuron-related [Danio rerio]
          Length = 237

 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = +1

Query: 334 TWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPI 495
           +WR GD C A + +D + Y AE+E + +   TA + F+ YGN E + L  ++ +
Sbjct: 72  SWRVGDHCMATWSQDGQVYEAEIEEIDNENGTAAITFAGYGNAEVMPLHMLKKV 125



>gi|27924238|gb|AAH45073.1| Unknown (protein for IMAGE:5542088)
           [Xenopus laevis]
          Length = 290

 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 21/53 (39%), Positives = 32/53 (59%)
 Frame = +1

Query: 331 KTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIR 489
           K WR GD C A++ ED   Y A + ++ +   T +V +S YGN EE  L+++R
Sbjct: 91  KKWRIGDTCNAVWSEDGNIYSATISSIDAKRGTCIVVYSGYGNSEEHSLADLR 143



>gi|13259512|ref|NP_075012.1| survival of motor neuron 1, telomeric
           isoform b; gemin 1 [Homo sapiens]
 gi|13259529|ref|NP_075014.1| survival of motor neuron 2, centromeric isoform b; gemin 1 [Homo
           sapiens]
          Length = 262

 Score = 46.2 bits (108), Expect = 5e-04
 Identities = 27/77 (35%), Positives = 42/77 (54%)
 Frame = +1

Query: 256 TGPKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAV 435
           T PKR+  P K  K  + +  A   + W+ GD+C A++ ED   Y A + ++     T V
Sbjct: 68  TTPKRK--PAKKNKSQKKNTAASL-QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCV 124

Query: 436 VKFSDYGNYEEVLLSNI 486
           V ++ YGN EE  LS++
Sbjct: 125 VVYTGYGNREEQNLSDL 141



>gi|13259527|ref|NP_075013.1| survival of motor neuron 2,
           centromeric isoform a; gemin 1 [Homo sapiens]
 gi|12654181|gb|AAH00908.1|AAH00908 survival of motor neuron 1, telomeric [Homo sapiens]
          Length = 282

 Score = 46.2 bits (108), Expect = 5e-04
 Identities = 27/77 (35%), Positives = 42/77 (54%)
 Frame = +1

Query: 256 TGPKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAV 435
           T PKR+  P K  K  + +  A   + W+ GD+C A++ ED   Y A + ++     T V
Sbjct: 68  TTPKRK--PAKKNKSQKKNTAASL-QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCV 124

Query: 436 VKFSDYGNYEEVLLSNI 486
           V ++ YGN EE  LS++
Sbjct: 125 VVYTGYGNREEQNLSDL 141



>gi|736411|gb|AAA64505.1| putative open reading frame; duplicate of
           the functional spinal muscular atrophy gene, cDNA clone
           BCD514, GenBank Accession Number U18423; it is not known
           if this copy of the gene is actually translated [Homo
           sapiens]
          Length = 293

 Score = 46.2 bits (108), Expect = 5e-04
 Identities = 27/77 (35%), Positives = 42/77 (54%)
 Frame = +1

Query: 256 TGPKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAV 435
           T PKR+  P K  K  + +  A   + W+ GD+C A++ ED   Y A + ++     T V
Sbjct: 67  TTPKRK--PAKKNKSQKKNTAASL-QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCV 123

Query: 436 VKFSDYGNYEEVLLSNI 486
           V ++ YGN EE  LS++
Sbjct: 124 VVYTGYGNREEQNLSDL 140



>gi|13259531|ref|NP_075015.1| survival of motor neuron 2,
           centromeric isoform c; gemin 1 [Homo sapiens]
          Length = 250

 Score = 46.2 bits (108), Expect = 5e-04
 Identities = 27/77 (35%), Positives = 42/77 (54%)
 Frame = +1

Query: 256 TGPKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAV 435
           T PKR+  P K  K  + +  A   + W+ GD+C A++ ED   Y A + ++     T V
Sbjct: 68  TTPKRK--PAKKNKSQKKNTAASL-QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCV 124

Query: 436 VKFSDYGNYEEVLLSNI 486
           V ++ YGN EE  LS++
Sbjct: 125 VVYTGYGNREEQNLSDL 141



>gi|4507091|ref|NP_000335.1| survival of motor neuron 1, telomeric
           isoform d; gemin 1 [Homo sapiens]
 gi|10937869|ref|NP_059107.1| survival of motor neuron 2, centromeric isoform d; gemin 1 [Homo
           sapiens]
 gi|2498924|sp|Q16637|SMN_HUMAN Survival motor neuron protein (Component of gems 1) (Gemin1)
 gi|1082808|pir||A55477 survival motor neuron protein - human
 gi|624186|gb|AAA66242.1| survival motor neuron
 gi|1314346|gb|AAC50473.1| survival motor neuron
 gi|1737214|gb|AAC52048.1| survival motor neuron protein SMN [Homo sapiens]
 gi|3688111|gb|AAC62262.1| survival of motor neuron 1 product [Homo sapiens]
 gi|3970964|gb|AAC83178.1| survival motor neuron 1 protein [Homo sapiens]
 gi|15929774|gb|AAH15308.1|AAH15308 survival of motor neuron 1, telomeric [Homo sapiens]
          Length = 294

 Score = 46.2 bits (108), Expect = 5e-04
 Identities = 27/77 (35%), Positives = 42/77 (54%)
 Frame = +1

Query: 256 TGPKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAV 435
           T PKR+  P K  K  + +  A   + W+ GD+C A++ ED   Y A + ++     T V
Sbjct: 68  TTPKRK--PAKKNKSQKKNTAASL-QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCV 124

Query: 436 VKFSDYGNYEEVLLSNI 486
           V ++ YGN EE  LS++
Sbjct: 125 VVYTGYGNREEQNLSDL 141



>gi|13183642|gb|AAK15281.1| survival motor neuron protein [Gallus
           gallus]
          Length = 264

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 21/58 (36%), Positives = 34/58 (58%)
 Frame = +1

Query: 331 KTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPIHAD 504
           K W+ GD C A++ ED   Y A + +++    T VV ++ YGN EE  L+++ P  +D
Sbjct: 78  KQWKVGDSCNAVWSEDGNVYPATIASINLKRGTCVVTYTGYGNKEEQNLADLLPPASD 135



>gi|28849927|ref|NP_783632.1| survival of motor neuron 1, telomeric
           [Bos taurus]
 gi|7676161|sp|O18870|SMN_BOVIN Survival motor neuron protein
 gi|3722000|gb|AAC63439.1| survival motor neuron protein [Bos taurus]
          Length = 287

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 26/75 (34%), Positives = 39/75 (51%)
 Frame = +1

Query: 262 PKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 441
           PKR+S   K ++    S      K W+ GD C A++ ED   Y A + ++     T VV 
Sbjct: 66  PKRKSAKNKSQRKNTTSP----SKQWKVGDNCCAIWSEDGCIYPATIASIDFKRETCVVV 121

Query: 442 FSDYGNYEEVLLSNI 486
           ++ YGN EE  LS++
Sbjct: 122 YTGYGNREEQNLSDL 136



>gi|27462896|gb|AAO15639.1|AF466193_1 survival motor neuron protein
           [Bos taurus]
          Length = 271

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 26/75 (34%), Positives = 39/75 (51%)
 Frame = +1

Query: 262 PKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 441
           PKR+S   K ++    S      K W+ GD C A++ ED   Y A + ++     T VV 
Sbjct: 68  PKRKSAKNKSQRKNTTSP----SKQWKVGDNCCAIWSEDGCIYPATIASIDFKRETCVVV 123

Query: 442 FSDYGNYEEVLLSNI 486
           ++ YGN EE  LS++
Sbjct: 124 YTGYGNREEQNLSDL 138



>gi|27462898|gb|AAO15640.1|AF466194_1 survival motor neuron protein
           [Bos taurus]
          Length = 271

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 26/75 (34%), Positives = 39/75 (51%)
 Frame = +1

Query: 262 PKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 441
           PKR+S   K ++    S      K W+ GD C A++ ED   Y A + ++     T VV 
Sbjct: 68  PKRKSAKNKSQRKNTTSP----SKQWKVGDNCCAIWSEDGCIYPATIASIDFKRETCVVV 123

Query: 442 FSDYGNYEEVLLSNI 486
           ++ YGN EE  LS++
Sbjct: 124 YTGYGNREEQNLSDL 138



>gi|27447276|gb|AAM18209.1| survival of motor neuron [Felis catus]
          Length = 290

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 26/75 (34%), Positives = 41/75 (54%)
 Frame = +1

Query: 262 PKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 441
           PKR+  P K  K  + +  A   K W+ GD+C A++ ED   Y A + ++     T VV 
Sbjct: 67  PKRK--PAKKNKSQKKNTTAAL-KQWKVGDKCSAIWSEDGCVYPATIASIDFKRETCVVV 123

Query: 442 FSDYGNYEEVLLSNI 486
           ++ YGN EE  +S++
Sbjct: 124 YTGYGNREEQNVSDL 138



>gi|15021902|dbj|BAB62226.1| tudor protein [Xenopus laevis]
          Length = 1905

 Score = 43.5 bits (101), Expect = 0.004
 Identities = 25/75 (33%), Positives = 39/75 (51%), Gaps = 1/75 (1%)
 Frame = +1

Query: 283  IKPEKIMEPSIH-AEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGN 459
            +K ++  E SIH   +      G  C  +Y +DN +YRA V  +    +T  V+F DYGN
Sbjct: 1042 VKVQEAGEHSIHDGRFSAEIEVGSPCNVIYSDDNYWYRAAVTKMKDDKVT--VRFVDYGN 1099

Query: 460  YEEVLLSNIRPIHAD 504
             E + +  +R + AD
Sbjct: 1100 EETLQMEQVRRLPAD 1114



>gi|2832313|gb|AAC01747.1| survival motor neuron [Rattus norvegicus]
          Length = 288

 Score = 43.5 bits (101), Expect = 0.004
 Identities = 25/72 (34%), Positives = 38/72 (52%)
 Frame = +1

Query: 271 RSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSD 450
           R  P K  K  + +  A   K W+ GD+C A++ ED   Y A + ++     T VV ++ 
Sbjct: 68  RRKPAKKNKNQKKNATAPL-KQWKAGDKCSAVWSEDGCVYPATITSVDLKRETCVVVYTG 126

Query: 451 YGNYEEVLLSNI 486
           YGN EE  LS++
Sbjct: 127 YGNKEEQNLSDL 138



>gi|11968084|ref|NP_071954.1| survival motor neuron [Rattus
           norvegicus]
 gi|3024613|sp|O35876|SMN_RAT Survival motor neuron protein
 gi|2393771|gb|AAB96377.1| survival of motor neuron [Rattus norvegicus]
          Length = 289

 Score = 43.5 bits (101), Expect = 0.004
 Identities = 25/72 (34%), Positives = 38/72 (52%)
 Frame = +1

Query: 271 RSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSD 450
           R  P K  K  + +  A   K W+ GD+C A++ ED   Y A + ++     T VV ++ 
Sbjct: 69  RRKPAKKNKNQKKNATAPL-KQWKAGDKCSAVWSEDGCVYPATITSVDLKRETCVVVYTG 127

Query: 451 YGNYEEVLLSNI 486
           YGN EE  LS++
Sbjct: 128 YGNKEEQNLSDL 139



>gi|31075799|gb|AAP42462.1| survival motor neuron [Canis familiaris]
          Length = 283

 Score = 43.1 bits (100), Expect = 0.005
 Identities = 25/75 (33%), Positives = 40/75 (53%)
 Frame = +1

Query: 262 PKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 441
           PKR+  P K  K  + +      K W+ GD+C A++ ED   Y A + ++     T VV 
Sbjct: 61  PKRK--PAKKNKSQKKNATTAL-KQWKVGDKCSAVWSEDGCIYPATIASIDFKRETCVVV 117

Query: 442 FSDYGNYEEVLLSNI 486
           ++ YGN EE  +S++
Sbjct: 118 YTGYGNREEQNVSDL 132



>gi|3024614|sp|O02771|SMN_CANFA Survival motor neuron protein
 gi|2130525|gb|AAB58318.1| survival motor neuron protein [Canis familiaris]
          Length = 287

 Score = 43.1 bits (100), Expect = 0.005
 Identities = 25/75 (33%), Positives = 40/75 (53%)
 Frame = +1

Query: 262 PKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 441
           PKR+  P K  K  + +      K W+ GD+C A++ ED   Y A + ++     T VV 
Sbjct: 65  PKRK--PAKKNKSQKKNATTAL-KQWKVGDKCSAVWSEDGCIYPATIASIDFKRETCVVV 121

Query: 442 FSDYGNYEEVLLSNI 486
           ++ YGN EE  +S++
Sbjct: 122 YTGYGNREEQNVSDL 136



>gi|6755580|ref|NP_035550.1| survival motor neuron [Mus musculus]
 gi|2498925|sp|P97801|SMN_MOUSE Survival motor neuron protein
 gi|1857114|gb|AAC53057.1| survival motor neuron
 gi|1946333|gb|AAC53144.1| survival motor neuron [Mus musculus]
 gi|3114879|emb|CAA73356.1| survival motor neuron [Mus musculus]
 gi|5932001|gb|AAD56757.1|AF131205_1 survival of motor neuron protein [Mus musculus]
 gi|28175331|gb|AAH45158.1| Smn protein [Mus musculus]
          Length = 288

 Score = 43.1 bits (100), Expect = 0.005
 Identities = 20/52 (38%), Positives = 31/52 (59%)
 Frame = +1

Query: 331 KTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNI 486
           K W+ GD+C A++ ED   Y A + ++     T VV ++ YGN EE  LS++
Sbjct: 87  KQWKVGDKCSAVWSEDGCIYPATITSIDFKRETCVVVYTGYGNREEQNLSDL 138



>gi|26023801|gb|AAN77614.1| survival of motor neuron protein [Mus
           musculus]
          Length = 264

 Score = 43.1 bits (100), Expect = 0.005
 Identities = 20/52 (38%), Positives = 31/52 (59%)
 Frame = +1

Query: 331 KTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNI 486
           K W+ GD+C A++ ED   Y A + ++     T VV ++ YGN EE  LS++
Sbjct: 63  KQWKVGDKCSAVWSEDGCIYPATITSIDFKRETCVVVYTGYGNREEQNLSDL 114



>gi|1588319|prf||2208336A SMN gene
          Length = 294

 Score = 42.4 bits (98), Expect = 0.008
 Identities = 27/77 (35%), Positives = 42/77 (54%)
 Frame = +1

Query: 256 TGPKRRSGPIKPEKIMEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAV 435
           T PKR+  P K  K  + +  A   + W+ GD+C A++ ED   Y A + ++     T V
Sbjct: 68  TTPKRK--PAKKNKSQKKNTAASL-QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCV 124

Query: 436 VKFSDYGNYEEVLLSNI 486
           V ++ YGN EE  LS++
Sbjct: 125 V-YTGYGNREEQNLSDL 140



>gi|13878217|ref|NP_113564.1| tudor domain containing 1 [Mus
           musculus]
 gi|17368626|sp|Q99MV1|TDR1_MOUSE Tudor domain containing protein 1
 gi|13603865|gb|AAK31970.1|AF285591_1 tudor domain containing protein 1 [Mus musculus]
          Length = 928

 Score = 42.4 bits (98), Expect = 0.008
 Identities = 24/54 (44%), Positives = 32/54 (58%)
 Frame = +1

Query: 340 RPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPIHA 501
           R GD C A Y  D+ +YRA V  L +S     V ++DYGN E + LS ++PI A
Sbjct: 740 RTGDACCAKYTNDDFWYRAIV--LETSESDVKVLYADYGNIETLPLSRVQPIPA 791




 Score = 40.4 bits (93), Expect = 0.030
 Identities = 21/50 (42%), Positives = 33/50 (66%)
 Frame = +1

Query: 346 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPI 495
           GD C A + ED+++YRA V A ++S  + +V + DYGN+E + L  + PI
Sbjct: 296 GDVCCAQFSEDDQWYRASVLA-YASEESVLVGYVDYGNFEILSLKRLCPI 344



>gi|21670847|dbj|BAC02433.1| tudor repeat protein [Mus musculus]
          Length = 1172

 Score = 42.4 bits (98), Expect = 0.008
 Identities = 24/54 (44%), Positives = 32/54 (58%)
 Frame = +1

Query: 340  RPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPIHA 501
            R GD C A Y  D+ +YRA V  L +S     V ++DYGN E + LS ++PI A
Sbjct: 984  RTGDACCAKYTNDDFWYRAIV--LETSESDVKVLYADYGNIETLPLSRVQPIPA 1035




 Score = 40.4 bits (93), Expect = 0.030
 Identities = 21/50 (42%), Positives = 33/50 (66%)
 Frame = +1

Query: 346 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPI 495
           GD C A + ED+++YRA V A ++S  + +V + DYGN+E + L  + PI
Sbjct: 540 GDVCCAQFSEDDQWYRASVLA-YASEESVLVGYVDYGNFEILSLKRLCPI 588



>gi|26325742|dbj|BAC26625.1| unnamed protein product [Mus musculus]
          Length = 1172

 Score = 42.4 bits (98), Expect = 0.008
 Identities = 24/54 (44%), Positives = 32/54 (58%)
 Frame = +1

Query: 340  RPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPIHA 501
            R GD C A Y  D+ +YRA V  L +S     V ++DYGN E + LS ++PI A
Sbjct: 984  RTGDACCAKYTNDDFWYRAIV--LETSESDVKVLYADYGNIETLPLSRVQPIPA 1035




 Score = 40.4 bits (93), Expect = 0.030
 Identities = 21/50 (42%), Positives = 33/50 (66%)
 Frame = +1

Query: 346 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPI 495
           GD C A + ED+++YRA V A ++S  + +V + DYGN+E + L  + PI
Sbjct: 540 GDVCCAQFSEDDQWYRASVLA-YASEESVLVGYVDYGNFEILSLKRLCPI 588



>gi|14278178|pdb|1G5V|A Chain A, Solution Structure Of The Tudor
           Domain Of The Human Smn Protein
          Length = 88

 Score = 42.0 bits (97), Expect = 0.010
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +1

Query: 337 WRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNI 486
           W+ GD+C A++ ED   Y A + ++     T VV ++ YGN EE  LS++
Sbjct: 11  WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDL 60



>gi|29726468|pdb|1MHN|A Chain A, High Resolution Crystal Structure
           Of The Smn Tudor Domain
          Length = 59

 Score = 42.0 bits (97), Expect = 0.010
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +1

Query: 337 WRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNI 486
           W+ GD+C A++ ED   Y A + ++     T VV ++ YGN EE  LS++
Sbjct: 4   WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDL 53



>gi|15077042|gb|AAK83042.1|AF287470_1 survival motor neuron protein
           [Bos taurus]
          Length = 163

 Score = 41.6 bits (96), Expect = 0.013
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +1

Query: 337 WRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNI 486
           W+ GD C A++ ED   Y A + ++     T VV ++ YGN EE  LS++
Sbjct: 15  WKVGDNCCAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDL 64



>gi|12584630|emb|CAC27400.1| survival motor neuron protein
           [Platichthys flesus]
          Length = 86

 Score = 40.8 bits (94), Expect = 0.023
 Identities = 18/48 (37%), Positives = 27/48 (55%)
 Frame = +1

Query: 334 TWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLL 477
           +W+ G+ C A + +D + Y AE+E +     TA V  S YGN E + L
Sbjct: 39  SWKVGNRCMAQWSQDGQVYEAEIEEIDRENGTAAVTSSGYGNAEVIPL 86



>gi|27659748|ref|XP_217641.1| similar to tudor repeat protein [Mus
           musculus] [Rattus norvegicus]
          Length = 1025

 Score = 40.4 bits (93), Expect = 0.030
 Identities = 21/50 (42%), Positives = 33/50 (66%)
 Frame = +1

Query: 346 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPI 495
           GD C A + ED+++YRA V A ++S  + +V + DYGN+E + L  + PI
Sbjct: 409 GDMCCAQFSEDDQWYRASVLA-YASEESVLVGYVDYGNFEILSLKRLCPI 457



>gi|31213491|ref|XP_315689.1| ENSANGP00000021797 [Anopheles gambiae]
 gi|21299665|gb|EAA11810.1| ENSANGP00000021797 [Anopheles gambiae str. PEST]
          Length = 935

 Score = 40.0 bits (92), Expect = 0.039
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +1

Query: 346 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEV 471
           GD C A + EDN++YRA+VE +   G   ++ + DYGN E V
Sbjct: 758 GDMCAAKFSEDNEWYRAKVEKVEKGGNVTIL-YIDYGNRETV 798



>gi|18000289|gb|AAL54906.1| survival motor neuron-like protein
           [Lapemis hardwickii]
          Length = 155

 Score = 40.0 bits (92), Expect = 0.039
 Identities = 19/56 (33%), Positives = 31/56 (54%)
 Frame = +1

Query: 301 MEPSIHAEYGKTWRPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEE 468
           +E   +A   K WR  D C A++ ED   Y+A + +++    T VV ++ YGN E+
Sbjct: 27  VERKNNAATQKLWRVNDACSAVWSEDGNVYQATIASVNWKKRTCVVIYTGYGNREQ 82



  Database: nr
    Posted date:  Jun 26, 2003 10:46 AM
  Number of letters in database: 468,778,868
  Number of sequences in database:  1,459,938
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 654,903,778
Number of Sequences: 1459938
Number of extensions: 13793337
Number of successful extensions: 29757
Number of sequences better than 5.0e-02: 84
Number of HSP's better than  0.1 without gapping: 28578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29690
length of database: 468,778,868
effective HSP length: 121
effective length of database: 292,126,370
effective search space used: 39729186320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)